Posts by Tags

RNA gir nytt liv til teorien om arv av ervervede egenskaper

3 minute read

Små RNA-molekyler kan nedarves fra mor til barn

Hverken fugl eller fisk, eller sopp, bare et nesledyr…

2 minute read

Genetiske analyser viser at Dendrogramma bare er et nesledyr…

Hverken fugl eller fisk, eller sopp

2 minute read

Dendrogramma, en ny dyrerekke er funnet

Notes on HCV RAS

3 minute read

Notes on HCV resistance mutations and drugs

Howe et al. 2022 JHEP Reports

1 minute read

Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals

NF workshop UiO

1 minute read

Notes from the NF workshop at UiO in December 2023

Nextflow selectors

less than 1 minute read

Notes on selectors in Nextflow

Leverage NF-core tooling and standards

less than 1 minute read

Notes from the webinar by Seqera Labs on using NF-core tools

Advanced Training - September 2023

2 minute read

Notes from the advanced training in September 2023

Some notes on using Nextflow

1 minute read

Some notes on Hybrid deployment, Nextflow Tower and Operators

Using dplyr::count() with variable column names

less than 1 minute read

Using dplyr::count() with variable column names

Split column with variable number of elements

1 minute read

Use str_split() to split a column when the number of elements is variable

Use stringr to extract only digits or only characters

less than 1 minute read

Use R regex and the stringr package to match only digits or only characters

Using map() to read files

less than 1 minute read

Some snippets on using map() to read files

Move every other row into two columns

less than 1 minute read

Use pivot_wider() to move every other row into two columns

Arrange rows in custom order

less than 1 minute read

Arrange rows in custom order

Plot coverage from bamfiles

less than 1 minute read

Use R and Tidyverse to plot read coverage from a bamfile

Combine mutate() with string manipulation

less than 1 minute read

Create a new column with mutate() by manipulating strings in another column

RNA gir nytt liv til teorien om arv av ervervede egenskaper

3 minute read

Små RNA-molekyler kan nedarves fra mor til barn

Our paper on cellularization in Sphaeroforma arctica is out in eLife!

less than 1 minute read

Check out our latest publication on development and cellularization in the ichthyosporean Sphaeroforma arctica which has been published in eLife.

Our paper on microRNAs in animal relatives is out in Current Biology!

less than 1 minute read

Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.

Our MBE paper on single-cell transcriptomics of Rhizaria is out!

less than 1 minute read

Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.

Move every other row into two columns

less than 1 minute read

Use pivot_wider() to move every other row into two columns

Arrange rows in custom order

less than 1 minute read

Arrange rows in custom order

Plot coverage from bamfiles

less than 1 minute read

Use R and Tidyverse to plot read coverage from a bamfile

Combine mutate() with string manipulation

less than 1 minute read

Create a new column with mutate() by manipulating strings in another column

Hverken fugl eller fisk, eller sopp, bare et nesledyr…

2 minute read

Genetiske analyser viser at Dendrogramma bare er et nesledyr…

Svampene tar tilbake førsteplassen

3 minute read

Svampene har tatt tilbake plassen som det første dyret

Ribbemaneter med skjelett

2 minute read

Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.

Hverken fugl eller fisk, eller sopp

2 minute read

Dendrogramma, en ny dyrerekke er funnet

Var forfaren vår en ribbemanet?

5 minute read

Ribbemanetene har tatt over plassen som det første dyret

Hverken fugl eller fisk, eller sopp, bare et nesledyr…

2 minute read

Genetiske analyser viser at Dendrogramma bare er et nesledyr…

Svampene tar tilbake førsteplassen

3 minute read

Svampene har tatt tilbake plassen som det første dyret

Ribbemaneter med skjelett

2 minute read

Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.

Hverken fugl eller fisk, eller sopp

2 minute read

Dendrogramma, en ny dyrerekke er funnet

Var forfaren vår en ribbemanet?

5 minute read

Ribbemanetene har tatt over plassen som det første dyret

Gener som oppstår fra søppel?!

5 minute read

Noen gener har oppstått fra søppel-DNA

RNA gir nytt liv til teorien om arv av ervervede egenskaper

3 minute read

Små RNA-molekyler kan nedarves fra mor til barn

Gener som oppstår fra søppel?!

5 minute read

Noen gener har oppstått fra søppel-DNA

Our pre-print on cellularization in S. arctica is featured in preLights

less than 1 minute read

Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights

Advanced Training - September 2023

2 minute read

Notes from the advanced training in September 2023

Our pre-print on cellularization in S. arctica is featured in preLights

less than 1 minute read

Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights

Story on Forskning.no about our micro RNA research

less than 1 minute read

Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.

Story on Forskning.no about our micro RNA research

less than 1 minute read

Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.

Our paper on microRNAs in animal relatives is out in Current Biology!

less than 1 minute read

Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.

Gener som oppstår fra søppel?!

5 minute read

Noen gener har oppstått fra søppel-DNA

RNA gir nytt liv til teorien om arv av ervervede egenskaper

3 minute read

Små RNA-molekyler kan nedarves fra mor til barn

Advanced Training - September 2023

2 minute read

Notes from the advanced training in September 2023

Notes on HCV RAS

3 minute read

Notes on HCV resistance mutations and drugs

Howe et al. 2022 JHEP Reports

1 minute read

Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals

Our paper on cellularization in Sphaeroforma arctica is out in eLife!

less than 1 minute read

Check out our latest publication on development and cellularization in the ichthyosporean Sphaeroforma arctica which has been published in eLife.

Our pre-print on cellularization in S. arctica is featured in preLights

less than 1 minute read

Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights

Story on Forskning.no about our micro RNA research

less than 1 minute read

Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.

Our paper on microRNAs in animal relatives is out in Current Biology!

less than 1 minute read

Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.

Our MBE paper on single-cell transcriptomics of Rhizaria is out!

less than 1 minute read

Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.

Notes on HCV RAS

3 minute read

Notes on HCV resistance mutations and drugs

Howe et al. 2022 JHEP Reports

1 minute read

Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals

Var forfaren vår en ribbemanet?

5 minute read

Ribbemanetene har tatt over plassen som det første dyret

Svampene tar tilbake førsteplassen

3 minute read

Svampene har tatt tilbake plassen som det første dyret

Ribbemaneter med skjelett

2 minute read

Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.

Nextflow selectors

less than 1 minute read

Notes on selectors in Nextflow

Our MBE paper on single-cell transcriptomics of Rhizaria is out!

less than 1 minute read

Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.

Var forfaren vår en ribbemanet?

5 minute read

Ribbemanetene har tatt over plassen som det første dyret

Svampene tar tilbake førsteplassen

3 minute read

Svampene har tatt tilbake plassen som det første dyret

Notes from the book series ‘The Great Mental Models’

Notes on ‘The Great Mental Models’

Notes from the book series ‘The Great Mental Models’

Notes on ‘The Great Mental Models’

Split and plot NextClade mutations

Some snippets on Tidyverse usage

A random collection of useful tidyverse commands

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

Split and plot NextClade mutations

Some snippets on Tidyverse usage

A random collection of useful tidyverse commands

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

Mapping reads to reference genome

How to map reads to a reference genome using TopHat2 project on Abel at UiO

Testing Gist and embedding scripts

How to use a Gist to embed code

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

Quality trimming and removing adaptors

How to set up a bioinformatics project on Abel at UiO

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...

Setting up a project on Abel

How to set up a bioinformatics project on Abel at UiO

Checking sequence quality using FastQC

How to run FastQC on your sequence data

Quality trimming and removing adaptors

How to set up a bioinformatics project on Abel at UiO

Mapping reads to reference genome

How to map reads to a reference genome using TopHat2 project on Abel at UiO

Testing Gist and embedding scripts

How to use a Gist to embed code

R for Epidemiology

Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...