RNA gir nytt liv til teorien om arv av ervervede egenskaper
Små RNA-molekyler kan nedarves fra mor til barn
Posts by Tags
Darwin
Dendrogramma
Hverken fugl eller fisk, eller sopp, bare et nesledyr…
Genetiske analyser viser at Dendrogramma bare er et nesledyr…
Hverken fugl eller fisk, eller sopp
Dendrogramma, en ny dyrerekke er funnet
HCV
Notes on HCV RAS
Notes on HCV resistance mutations and drugs
Howe et al. 2022 JHEP Reports
Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals
Nextflow
NF workshop UiO
Notes from the NF workshop at UiO in December 2023
Nextflow selectors
Notes on selectors in Nextflow
Leverage NF-core tooling and standards
Notes from the webinar by Seqera Labs on using NF-core tools
Advanced Training - September 2023
Notes from the advanced training in September 2023
Some notes on using Nextflow
Some notes on Hybrid deployment, Nextflow Tower and Operators
R
Using dplyr::count() with variable column names
Using dplyr::count() with variable column names
Split column with variable number of elements
Use str_split() to split a column when the number of elements is variable
Use stringr to extract only digits or only characters
Use R regex and the stringr package to match only digits or only characters
Using map() to read files
Some snippets on using map() to read files
Move every other row into two columns
Use pivot_wider() to move every other row into two columns
Arrange rows in custom order
Arrange rows in custom order
Plot coverage from bamfiles
Use R and Tidyverse to plot read coverage from a bamfile
Combine mutate() with string manipulation
Create a new column with mutate() by manipulating strings in another column
RNA
RNA gir nytt liv til teorien om arv av ervervede egenskaper
Små RNA-molekyler kan nedarves fra mor til barn
RNA-seq
Our paper on cellularization in Sphaeroforma arctica is out in eLife!
Check out our latest publication on development and cellularization in the ichthyosporean Sphaeroforma arctica which has been published in eLife.
Our paper on microRNAs in animal relatives is out in Current Biology!
Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.
Our MBE paper on single-cell transcriptomics of Rhizaria is out!
Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.
Tidyverse
Move every other row into two columns
Use pivot_wider() to move every other row into two columns
Arrange rows in custom order
Arrange rows in custom order
Plot coverage from bamfiles
Use R and Tidyverse to plot read coverage from a bamfile
Combine mutate() with string manipulation
Create a new column with mutate() by manipulating strings in another column
dyr
Hverken fugl eller fisk, eller sopp, bare et nesledyr…
Genetiske analyser viser at Dendrogramma bare er et nesledyr…
Svampene tar tilbake førsteplassen
Svampene har tatt tilbake plassen som det første dyret
Ribbemaneter med skjelett
Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.
Hverken fugl eller fisk, eller sopp
Dendrogramma, en ny dyrerekke er funnet
Var forfaren vår en ribbemanet?
Ribbemanetene har tatt over plassen som det første dyret
evolusjon
Hverken fugl eller fisk, eller sopp, bare et nesledyr…
Genetiske analyser viser at Dendrogramma bare er et nesledyr…
Svampene tar tilbake førsteplassen
Svampene har tatt tilbake plassen som det første dyret
Ribbemaneter med skjelett
Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.
Hverken fugl eller fisk, eller sopp
Dendrogramma, en ny dyrerekke er funnet
Var forfaren vår en ribbemanet?
Ribbemanetene har tatt over plassen som det første dyret
Gener som oppstår fra søppel?!
Noen gener har oppstått fra søppel-DNA
RNA gir nytt liv til teorien om arv av ervervede egenskaper
Små RNA-molekyler kan nedarves fra mor til barn
gener
Gener som oppstår fra søppel?!
Noen gener har oppstått fra søppel-DNA
lncRNA
Our pre-print on cellularization in S. arctica is featured in preLights
Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights
map
Advanced Training - September 2023
Notes from the advanced training in September 2023
media
Our pre-print on cellularization in S. arctica is featured in preLights
Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights
Story on Forskning.no about our micro RNA research
Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.
miRNA
Story on Forskning.no about our micro RNA research
Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.
Our paper on microRNAs in animal relatives is out in Current Biology!
Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.
non-coding DNA
Gener som oppstår fra søppel?!
Noen gener har oppstått fra søppel-DNA
RNA gir nytt liv til teorien om arv av ervervede egenskaper
Små RNA-molekyler kan nedarves fra mor til barn
operators
Advanced Training - September 2023
Notes from the advanced training in September 2023
paper
Notes on HCV RAS
Notes on HCV resistance mutations and drugs
Howe et al. 2022 JHEP Reports
Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals
Our paper on cellularization in Sphaeroforma arctica is out in eLife!
Check out our latest publication on development and cellularization in the ichthyosporean Sphaeroforma arctica which has been published in eLife.
Our pre-print on cellularization in S. arctica is featured in preLights
Our preprint on the development and cellularization of the ichthyosporean S. arctica is featured in preLights
Story on Forskning.no about our micro RNA research
Forskning.no recently made a small piece about our research on micro RNAs in the single-celled animal relatives.
Our paper on microRNAs in animal relatives is out in Current Biology!
Finally our study on microRNAs and their biogenesis machinery in ichthyosporeans is published in Current Biology.
Our MBE paper on single-cell transcriptomics of Rhizaria is out!
Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.
paper_notes
Notes on HCV RAS
Notes on HCV resistance mutations and drugs
Howe et al. 2022 JHEP Reports
Title: Characteristics of hepatitis C virus resistance in an international cohort after a decade of direct-acting antivirals
ribbemanet
Var forfaren vår en ribbemanet?
Ribbemanetene har tatt over plassen som det første dyret
ribbemaneter
Svampene tar tilbake førsteplassen
Svampene har tatt tilbake plassen som det første dyret
Ribbemaneter med skjelett
Selv om dagens ribbemaneter bare er noen myke geleklumper, viser nye fossiler at de kanskje en gang hadde skjelett.
selectors
Nextflow selectors
Notes on selectors in Nextflow
single-cell
Our MBE paper on single-cell transcriptomics of Rhizaria is out!
Finally our paper using single-cell transcriptomics on Radiolarians is published in MBE.
svamp
Var forfaren vår en ribbemanet?
Ribbemanetene har tatt over plassen som det første dyret
svamper
Svampene tar tilbake førsteplassen
Svampene har tatt tilbake plassen som det første dyret
Farnam Street
Notes from the book ‘Clear Thinking’ by Shane Parrish
Notes on ‘Clear Thinking’
Notes from the book series ‘The Great Mental Models’
Notes on ‘The Great Mental Models’
Great Mental Models
Notes from the book series ‘The Great Mental Models’
Notes on ‘The Great Mental Models’
R
Some snippets on Tidyverse usage
A random collection of useful tidyverse commands
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
SARS-CoV-2
Shane Parrish
Notes from the book ‘Clear Thinking’ by Shane Parrish
Notes on ‘Clear Thinking’
Notes from the book series ‘The Great Mental Models’
Notes on ‘The Great Mental Models’
Tidyverse
Some snippets on Tidyverse usage
A random collection of useful tidyverse commands
bivariate
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
correlation
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
count
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
descriptive_analysis
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
dispersion
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
factors
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
group_by
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
index
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
mapping
Mapping reads to reference genome
How to map reads to a reference genome using TopHat2 project on Abel at UiO
Testing Gist and embedding scripts
How to use a Gist to embed code
mean
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
median
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
mode
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
percentage
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
range
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
sample
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
standard_deviation
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
summarise
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
trimming
Quality trimming and removing adaptors
How to set up a bioinformatics project on Abel at UiO
univariate
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...
unix
Setting up a project on Abel
How to set up a bioinformatics project on Abel at UiO
Checking sequence quality using FastQC
How to run FastQC on your sequence data
Quality trimming and removing adaptors
How to set up a bioinformatics project on Abel at UiO
Mapping reads to reference genome
How to map reads to a reference genome using TopHat2 project on Abel at UiO
Testing Gist and embedding scripts
How to use a Gist to embed code
variance
R for Epidemiology
Contents Descriptive analysis Categorical data Factors in R Height and Weight Data Calculating frequenci...